Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
Academic Article
Publication Date:
2020
abstract:
We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.
Iris type:
Articolo su Rivista
List of contributors:
Alm, Erik; Broberg, Eeva K.; Connor, Thomas; Hodcroft, Emma B.; Komissarov, Andrey B.; Maurer-Stroh, Sebastian; Melidou, Angeliki; Neher, Richard A.; O'Toole, Áine; Pereyaslov, Dmitriy; Beerenwinkel, Niko; Posada-Céspedes, Susana; Jablonski, Kim Philipp; Ferreira, Pedro Falé; Topolsky, Ivan; Avšič-Županc, Tatjana; Korva, Miša; Poljak, Mario; Zakotnik, Samo; Zorec, Tomaž Mark; Bragstad, Karoline; Hungnes, Olav; Stene-Johansen, Kathrine; Reusken, Chantal; Meijer, Adam; Vennema, Harry; Ruiz-Roldán, Lidia; Bracho, María Alma; García-González, Neris; Chiner-Oms, Álvaro; Cancino-Muñoz, Irving; Comas, Iñaki; Goig, Galo A.; Torres-Puente, Manuela; López, Mariana G.; Martínez-Priego, Llúcia; D'Auria, Giuseppe; Ruíz-Hueso, Paula; Ferrús-Abad, Loreto; de Marco, Griselda; Galan-Vendrell, Inmaculada; Carbó-Ramirez, Sandra; Ruiz-Rodriguez, Paula; Coscollá, Mireia; Polackova, Katerina; Kramna, Lenka; Cinek, Ondrej; Richter, Jan; Krashias, George; Tryfonos, Christina; Bashiardes, Stavros; Koptides, Dana; Christodoulou, Christina; Bartolini, Barbara; Gruber, Cesare Em; Di Caro, Antonino; Castilletti, Concetta; Stefani, Fabrizio; Rimoldi, Sara Giordana; Romeri, Francesca; Salerno, Franco; Polesello, Stefano; Nagy, Alexander; Jirincova, Helena; Vecerova, Jaromira; Novakova, Ludmila; Cordey, Samuel; Murtskhvaladze, Marine; Kotaria, Nato; Schär, Tobias; Beisel, Christian; Vugrek, Oliver; Rokić, Filip; Trgovec-Greif, Lovro; Jurak, Igor; Rukavina, Tomislav; Sučić, Neven; Schønning, Kristian; Karst, Søren M.; Kirkegaard, Rasmus H.; Michaelsen, Thomas Y.; Sørensen, Emil Aa; Knutson, Simon; Brandt, Jakob; Le-Quy, Vang; Sørensen, Trine; Petersen, Celine; Pedersen, Martin Schou; Larsen, Sanne Løkkegaard; Skov, Marianne Nielsine; Rasmussen, Morten; Fonager, Jannik; Fomsgaard, Anders; Maksyutov, Rinat Amirovich; Gavrilova, Elena Vasil'Evna; Pyankov, Oleg Victorovich; Bodnev, Sergey Alexandrovich; Tregubchak, Tatyana Vladimirovna; Shvalov, Alexander Nikolayevich; Antonets, Denis Victorovich; Resende, Paola Cristina; Goya, Stephanie; Perrin, Amandine; Lee, Raphael Tc; Yadahalli, Shilpa; Han, Alvin X.; Russell, Colin A.; Schmutz, Stefan; Zaheri, Maryam; Kufner, Verena; Huber, Michael; Trkola, Alexandra; Antwerpen, Markus; Walter, Mathias C.; van der Werf, Sylvie; Gambaro, Fabiana; Behillil, Sylvie; Enouf, Vincent; Donati, Flora; Ustinova, Monta; Rovite, Vita; Klovins, Janis; Savicka, Oksana; Wienecke-Baldacchino, Anke K.; Ragimbeau, Catherine; Fournier, Guillaume; Mossong, Joël; Aberle, Stephan W.; Haukland, Mattias; Enkirch, Theresa; Advani, Abdolreza; Karlberg, Maria Lind; Lindsjö, Oskar Karlsson; Broddesson, Sandra; Sláviková, Monika; Ličková, Martina; Klempa, Boris; Staroňová, Edita; Tichá, Elena; Szemes, Tomáš; Rusňáková, Diana; Stadler, Tanja; Quer, Josep; Anton, Andres; Andres, Cristina; Piñana, Maria; Garcia-Cehic, Damir; Pumarola, Tomas; Izopet, Jacques; Gioula, Georgia; Exindari, Maria; Papa, Anna; Chatzidimitriou, Dimitrios; Metallidis, Symeon; Pappa, Stella; Macek, Milan; Geryk, Jan; Brož, Petr; Briksí, Aleš; Hubáček, Petr; Dřevínek, Pavel; Zajac, Miroslav; Kvapil, Petr; Holub, Michal; Kvapilová, Kateřina; Novotný, Adam; Kašný, Martin; Klempt, Petr; Vapalahti, Olli; Smura, Teemu; Sironen, Tarja; Selhorst, Philippe; Anthony, Colin; Ariën, Kevin; Simon-Loriere, Etienne; Rabalski, Lukasz; Bienkowska-Szewczyk, Krystyna; Borges, Vítor; Isidro, Joana; Gomes, João Paulo; Guiomar, Raquel; Pechirra, Pedro; Costa, Inês; Duarte, Sílvia; Vieira, Luís; Pyrc, Krzysztof; Zuckerman, Neta S.; Turdikulova, Shahlo; Abdullaev, Alisher; Dalimova, Dilbar; Abdurakhimov, Abror; Tagliabracci, Adriano; Alessandrini, Federica; Melchionda, Filomena; Onofri, Valerio; Turchi, Chiara; Bagnarelli, Patrizia; Menzo, Stefano; Caucci, Sara; Di Sante, Laura; Popa, Alexandra; Genger, Jakob-Wendelin; Agerer, Benedikt; Lercher, Alexander; Endler, Lukas; Smyth, Mark; Penz, Thomas; Schuster
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